MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.3324987535459469
cnr3.8050758169445893
efc0.6176265227041637
fber66.80757904052734
fwhmavg4.080743333333333
fwhmx3.83667
fwhmy4.29598
fwhmz4.10958
icvscsf0.2131268249349136
icvsgm0.4364072287120541
icvswm0.3504659463530323
inumed1.083238124847412
inurange0.39807548224926004
qi10.0
qi20.0006307861155423974
rpvecsf23.55017827286828
rpvegm12.143958650898675
rpvewm17.650132627194683
sizex180
sizey256
sizez256
snrcsf2.657015059492863
snrgm10.138243844442123
snrtotal9.534402000675842
snrwm15.807947098092539
snrdcsf10.241192312164435
snrdgm21.16399860031323
snrdtotal21.4059135643593
snrdwm32.812549780600236
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk4.85485162308115
summarybgmad19.96648406982422
summarybgmean66.56134796142578
summarybgmedian61.55760955810547
summarybgn3176428.0
summarybgp0536.374216651916505
summarybgp95114.5195457458496
summarybgstdv25.598512649536133
summarycsfk0.09661415739572199
summarycsfmad127.89640808105469
summarycsfmean319.3908996582031
summarycsfmedian312.119140625
summarycsfn21674.0
summarycsfp05144.73486938476563
summarycsfp95515.9854248046875
summarycsfstdv117.46713256835938
summarygmk0.24649208956905078
summarygmmad60.888492584228516
summarygmmean646.134765625
summarygmmedian645.01171875
summarygmn29605.0
summarygmp05542.1775756835938
summarygmp95753.3183959960938
summarygmstdv63.620567321777344
summarywmk0.8889838284314386
summarywmmad57.152217864990234
summarywmmean1002.2200317382812
summarywmmedian1000.022705078125
summarywmn192981.0
summarywmp05901.1056518554688
summarywmp951109.0938720703125
summarywmstdv63.26059341430664
tpmoverlapcsf0.20938898622989655
tpmoverlapgm0.5231320261955261
tpmoverlapwm0.5606870651245117
wm2max0.656777347636315

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum73d8d40d22b5a3d548f03caedac3bf99
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.