MRIQC: individual T1w report

Summary

Subject ID: 008_ControlPre.
Date and time: 2018-05-06, 23:31.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.3324987535459469
cnr			3.8050758169445893
efc			0.6176265227041637
fber			66.80757904052734
fwhm	avg		4.080743333333333
fwhm	x		3.83667
fwhm	y		4.29598
fwhm	z		4.10958
icvs	csf		0.2131268249349136
icvs	gm		0.4364072287120541
icvs	wm		0.3504659463530323
inu	med		1.083238124847412
inu	range		0.39807548224926004
qi	1		0.0
qi	2		0.0006307861155423974
rpve	csf		23.55017827286828
rpve	gm		12.143958650898675
rpve	wm		17.650132627194683
size	x		180
size	y		256
size	z		256
snr	csf		2.657015059492863
snr	gm		10.138243844442123
snr	total		9.534402000675842
snr	wm		15.807947098092539
snrd	csf		10.241192312164435
snrd	gm		21.16399860031323
snrd	total		21.4059135643593
snrd	wm		32.812549780600236
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	4.85485162308115
summary	bg	mad	19.96648406982422
summary	bg	mean	66.56134796142578
summary	bg	median	61.55760955810547
summary	bg	n	3176428.0
summary	bg	p05	36.374216651916505
summary	bg	p95	114.5195457458496
summary	bg	stdv	25.598512649536133
summary	csf	k	0.09661415739572199
summary	csf	mad	127.89640808105469
summary	csf	mean	319.3908996582031
summary	csf	median	312.119140625
summary	csf	n	21674.0
summary	csf	p05	144.73486938476563
summary	csf	p95	515.9854248046875
summary	csf	stdv	117.46713256835938
summary	gm	k	0.24649208956905078
summary	gm	mad	60.888492584228516
summary	gm	mean	646.134765625
summary	gm	median	645.01171875
summary	gm	n	29605.0
summary	gm	p05	542.1775756835938
summary	gm	p95	753.3183959960938
summary	gm	stdv	63.620567321777344
summary	wm	k	0.8889838284314386
summary	wm	mad	57.152217864990234
summary	wm	mean	1002.2200317382812
summary	wm	median	1000.022705078125
summary	wm	n	192981.0
summary	wm	p05	901.1056518554688
summary	wm	p95	1109.0938720703125
summary	wm	stdv	63.26059341430664
tpm	overlap	csf	0.20938898622989655
tpm	overlap	gm	0.5231320261955261
tpm	overlap	wm	0.5606870651245117
wm2max			0.656777347636315

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	73d8d40d22b5a3d548f03caedac3bf99
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.